PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G189400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 1163aa    MW: 129107 Da    PI: 6.5106
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G189400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.17.2e-23147248199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F  
  Brast07G189400.1.p 147 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV- 234
                         99*****************************954.4444.48************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++++l+++++r+
  Brast07G189400.1.p 235 -RDERQQLLLGIRRA 248
                         .4577788***9997 PP

2Auxin_resp113.22.4e-37273356183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+ S+Wr+L+
  Brast07G189400.1.p 273 AAHADANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKTSQWRNLQ 356
                         78999*******************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575131No hitNo description
SuperFamilySSF1019367.06E-42136276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-41139262IPR015300DNA-binding pseudobarrel domain
CDDcd100173.16E-19146238No hitNo description
PfamPF023627.7E-21147248IPR003340B3 DNA binding domain
SMARTSM010195.5E-22147249IPR003340B3 DNA binding domain
PROSITE profilePS5086311.899147249IPR003340B3 DNA binding domain
PfamPF065076.4E-32273356IPR010525Auxin response factor
PfamPF023098.7E-1010271113IPR033389AUX/IAA domain
PROSITE profilePS5174525.96510281112IPR000270PB1 domain
SuperFamilySSF542771.86E-710431107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1163 aa     Download sequence    Send to blast
MMKQQQQPAA AAVSAAAGAA VTVASLAGAG CEAEKKAPVI NSELWHACAG PLVSLPPAGS  60
LVVYFPQGHS EQVAASMQKD VDAHVPNYPN LPSKLICLLH NITLHADLET DEVYAQMTLQ  120
PVTSYGKEAL QLSELALKQA RPQNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM  180
QPPAQEIQAR DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS VIFVRDERQQ  240
LLLGIRRANR QPTNISSSVL SSDSMHIGIL AAAAHADANN SPFTIFYNPR ASPTEFVIPF  300
AKYQKAVYGN QLSLGMRFRM MFETEELGTR RYMGTITGIS DLDPVRWKTS QWRNLQVGWD  360
ESAAGERRNR VSIWEIEPVA APFFICPPPF FGAKRPRQLD DESSEMENLL KRAMPWLGEE  420
ICIKDPQTQN TIMPGLSLVQ WMNMNMQQGS SFANTAMQSE YLRSITNPSM QHIGSTDLSR  480
QLLQNQLLQQ NSIQFNTTKL PQQLQPNNDL SKAALPSNQL GVSTKPQEQT QDASNLQRQQ  540
QSMNYALPLS QAQTSLAQAQ VLVQNQMQQQ PMSQNQLPAA SQPLLPQQQQ QHQQQQHHHH  600
HHQQQQQQQQ QKLLHQQQQQ LLLQQQQLQQ HNQNQQQLNK MPAQVPNLAN QQLQLSDQQL  660
QLQLLQKLQQ QQHSLLSQPG VTLAQLPLIQ EQQKLLMDMQ QQLSNSHSLT QQQMMPQQST  720
KIPSQTTPMP LPMQPDTQQK LPQKQAVAAD TSEAAVPPTT SLNFSSANGS PLRMPGATHS  780
VVTEEIPSCS TSPSTANGNH LLQPGTGRNQ YCNMINTEKV PQSTAPMSVP SSLEVVTGPP  840
RMATELPKLT SNVKQSMVAS KLQNAGAGPQ NFVDNAPPTD YLETASSATS VWLSQTDGLL  900
HQSFPMSNFN QQPMFKDAPP ETEIHADVPS NNTLFGISND GQVGFPMGTD DFLTNGLDAT  960
KYQNHISTDI DNNYIIPKDA QQEISSSMVS QSFGASDMAF NSIDSGINDG TFFNRSSWPP  1020
APPIKRMRTF TKVYKRGAVG RSIDISQYAG YDELKHALAR MFSIEGQLEE RQRIGWKLVY  1080
RDHEDDILLL GDDPWEEFVN CVKYIRILSP QEVQQMSLDG DLGSNIIPNQ ACSSSDGGGN  1140
AWRARCDQNS GNPSTGSYDQ FE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1693637747388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3697130.0AK369713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2096H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563519.10.0PREDICTED: auxin response factor 19-like
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLI1GWQ90.0I1GWQ9_BRADI; Auxin response factor
STRINGBRADI1G34340.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19